dsUnitSaveAutoGenTestData

PURPOSE

SYNOPSIS

DESCRIPTION

 Inputs:
   argin: cell array with input arguments
   argout: cell array with output arguments
   localFn_flag: logical of whether to include 'fn1__fn2' in fnName or 'fn1'

CROSS-REFERENCE INFORMATION

• dsGetConfig GETCONFIG - returns the value of the variable specificed as string in argument

• dsImport DSIMPORT - load data into DynaSim formatted data structure.
• dsApplyModifications APPLYMODIFICATIONS - Apply modifications to DynaSim specification or model structure
• dsCalcACF CALCACF - Calculate the autocorrelation function.
• dsCalcAverages CALCAVERAGES - Average fields in a DynaSim data struct across neurons
• dsCalcCellProperties CALCCELLPROPERTIES - calculates the intrinsic electrophysiological properties of all cells in one or more populations
• dsCalcFR CALCFR - Calculate firing rage for DynaSim data
• dsCalcFRmulti CALCFRMULTI - extends dsCalcFR to get SUA and MUA firing rates
• dsCalcISI CALCISI - Calculate the interspike interval.
• dsCalcPower CALCPOWER - Compute spectral analysis of DynaSim data
• dsCalcSpikeSync CALCSPIKESYNC - Compute spike synchronization between spiketrains
• dsCalcSumOverFields CALCSUMOVERFIELDS - Creates a new field in data that is the sum of a bunch of other fields
• dsCheckCovary CHECKCOVARY - TODO I assume this checks if any varied parameters are covaried?
• dsCheckData CHECKDATA - Standardize data structure and auto-populate missing fields
• dsCheckHostPaths CHECKHOSTPATHS - Compare paths on host to those set in studyinfo when batch was created
• dsCheckModel CHECKMODEL - Standardize model structure and auto-populate missing fields
• dsCheckSpecification CHECKSPECIFICATION - standardize specification structure and auto-populate missing fields
• dsClassifyEquation CLASSIFYEQUATION - use regular expressions to classify model expressions in STRING
• dsCollectVariedParams COLLECTVARIEDPARAMS - Gathers info on parameters that have been varied in a batch
• dsCombineModels COMBINEMODELS - combine subfields in two DynaSim model structures
• dsDynasim2odefun Purpose: prepare ODEFUN for use with built-in Matlab solvers.
• dsGenerateModel GENERATEMODEL - Parse DynaSim specification and organize model data in DynaSim model structure
• dsGetParentNamespace GETPARENTNAMESPACE - determine parent namespace from namespace specified in namespace
• dsParseModelEquations PARSEMODELEQUATIONS - parse equations and organize model data in DynaSim model structure
• dsPropagateFunctions PROPAGATEFUNCTIONS - eliminate internal function calls from model ODEs, ICs, monitors, and conditionals.
• dsPropagateNamespaces PROPAGATENAMESPACES - namespace-establishing namespace substitutions.
• dsPropagateParameters PROPAGATEPARAMETERS - substitute parameter values or prepend parameter names with prefix across all model equations.
• dsSelectVariables SELECTVARIABLES - determine what variables to plot
• dsStrrep STRREP - replace full words by new character strings, ignoring matches that appear as sub-strings.
• dsStrrep2 STRREP2 - replace full words by new character strings, WITHOUT ignoring matches that appear as sub-strings.
• dsUnitSaveAutoGenTestDataLocalFn % saveAutoGenTestDataLocalFn(argin, argout)

SOURCE CODE

0001 function dsUnitSaveAutoGenTestData(argin, argout, localFn_flag)
0002 % Inputs:
0003 %   argin: cell array with input arguments
0004 %   argout: cell array with output arguments
0005 %   localFn_flag: logical of whether to include 'fn1__fn2' in fnName or 'fn1'
0006 
0007 if ~exist('localFn_flag','var')
0008   localFn_flag = false;
0009 end
0010 
0011 % get fn name from stack
0012 stack = dbstack;
0013 if ~localFn_flag
0014   fnNameStack = stack(2).name;
0015   fnName = fnNameStack;
0016 else
0017   fnNameStack = stack(4).name;
0018   fnName = [fnNameStack '__' stack(3).name];
0019 end
0020 
0021 hash = DataHash(argin);
0022 
0023 testFileName = sprintf('%s_autogen_%s.mat', fnName, hash);
0024 testFileDir = fullfile(dsGetConfig('ds_unitTestData_path'), 'autogen_newSave');
0025 mkdirSilent(testFileDir);
0026 testFilePath = fullfile(testFileDir, testFileName);
0027 save(testFilePath, 'argin', 'argout')
0028 
0029 end